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raghu Machiraju

  • Professor, SBS-Biomedical Informatics
  • Professor, Pathology
  • Professor, Computer Science & Engineering
  • IntDir of Data Analyt Collabor, Translational Data Analytics
  • 779 Dreese Laboratories
    2015 Neil Ave
    Columbus, OH 43210
  • 614-292-6730

Journal Articles

2015

  • Ding H, Wang C, Huang K, Machiraju R., 2015, "GRAPHIE: graph based histology image explorer." . BMC Bioinformatics. 2015 Suppl 11, no. S10, 1186 - 1186.
  • Myers,Emma,M; Bartlett,Christopher,W; Machiraju,Raghu; Bohland,Jason,W, 2015, "An integrative analysis of regional gene expression profiles in the human brain." METHODS 73, 54-70 - 54-70.

2014

  • Li Q, Zachmann G, David F, Huang K, Machiraju R, 2014, "Observing Genomics and Phenotypical Patterns in the Developing Mouse Brain." IEEE Computer Graphics and Applications 4, 88-97 - 88-97.
  • Wang,Chao; Machiraju,Raghu; Huang,Kun, 2014, "Breast cancer patient stratification using a molecular regularized consensus clustering method." METHODS 67, no. 3, 304-312 - 304-312.
  • Yates,A; Webb,A; Sharpnack,M; Chamberlin,H; Huang,K; Machiraju,R, 2014, "Visualizing Multidimensional Data with Glyph SPLOMs." COMPUTER GRAPHICS FORUM 33, no. 3, 301-310 - 301-310.

2013

  • Wang C, Pecot T, Zynger D, Shapiro C, Machiraju R, Huang K, 2013, Identifying Survival Associated Morphological Features of Triple Negative Breast Cancer using Multiple Datasets. Journal of the American Medical Informatics Association : JAMIA. Epub: http://jamia.bmj.com/content/early/2013/04/11/amiajnl-2012-001538, no. NA, NA - NA.
  • Kalluru V, Machiraju R, Huang K., 2013, "Identify condition-specific gene co-expression networks.." Int J Comput Biol Drug Design 6, no. 1-2, 50-59 - 50-59.
  • Wolock,Samuel,L; Yates,Andrew; Petrill,Stephen,A; Bohland,Jason,W; Blair,Clancy; Li,Ning; Machiraju,Raghu; Huang,Kun; Bartlett,Christopher,W, 2013, "Gene X smoking interactions on human brain gene expression: finding common mechanisms in adolescents and adults." JOURNAL OF CHILD PSYCHOLOGY AND PSYCHIATRY 54, no. 10, 1109-1119 - 1109-1119.

2011

  • Singh, S.; Janoos, F.; Pécot, T.; Caserta, E. et al., 2011, "Identifying nuclear phenotypes using semi-supervised metric learning.." Information processing in medical imaging : proceedings of the ... conference 22, 398-410 - 398-410.
  • Janoos, F.; Singh, S.; Machiraju, R.; Wells, W.M. et al., 2011, "State-space models of mental processes from fMRI.." Information processing in medical imaging : proceedings of the ... conference 22, 588-599 - 588-599.
  • Sammet,Steffen; Evans,Kevin,D; Irfanoglu,M,Okan; Strapp,Ashley; Machiraju,Raghu, 2011, "THE FEASIBILITY OF HYBRID AUTOMATIC SEGMENTATION OF AXILLARY LYMPH NODES FROM A 3-D SONOGRAM." ULTRASOUND IN MEDICINE AND BIOLOGY 37, no. 12, 2075-2085 - 2075-2085.
  • Rink,Cameron; Christoforidis,Greg; Khanna,Savita; Peterson,Laura; Patel,Yojan; Khanna,Suchin; Abduljalil,Amir; Irfanoglu,Okan; Machiraju,Raghu; Bergdall,Valerie,K; Sen,Chandan,K, 2011, "Tocotrienol vitamin E protects against preclinical canine ischemic stroke by inducing arteriogenesis." JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM 31, no. 11, 2218-2230 - 2218-2230.

2008

  • Mosaliganti,Kishore; Pan,Tony; Ridgway,Randall; Sharp,Richard; Cooper,Lee; Gulacy,Alex; Sharma,Ashish; Irfanoglu,Okan; Machiraju,Raghu; Kurc,Tahsin; de Bruin,Alain; Wenzel,Pamela; Leone,Gustavo; Saltz,Joel; Huang,Kun, 2008, "An imaging workflow for characterizing phenotypical change in large histological mouse model datasets." JOURNAL OF BIOMEDICAL INFORMATICS 41, no. 6, 863-873 - 863-873.

2007

  • Mosaliganti,Kishore; Janoos,Firdaus; Sharp,Richard; Ridgway,Randall; Machiraju,Raghu; Huang,Kun; Wenzel,Pamela; deBruin,Alain; Leone,Gustavo; Saltz,Joel, 2007, "Detection and visualization of surface-pockets to enable phenotyping studies." IEEE TRANSACTIONS ON MEDICAL IMAGING 26, no. 9, 1283-1290 - 1283-1290.
  • Sharp,Richard,P; Ridgway,Randall; Mosaliganti,Kishore; Wenzel,Pamela; Pan,Tony; de Bruin,Alain; Machiraju,Raghu; Huang,Kun; Leone,Gustavo; Saltz,Joel,H, 2007, "Volume rendering phenotype differences in mouse placenta microscopy data." COMPUTING IN SCIENCE & ENGINEERING 9, no. 1, 38-47 - 38-47.
  • Kaur, R.; Machiraju, R.; Nigam, K.D.P., 2007, "Agitation effects in a gas-liquid-liquid reactor system: Methyl ethyl ketazine production." International Journal of Chemical Reactor Engineering 5,
  • Wenzel,Pamela,L; Wu,Lizhao; de Bruin,Alain; Chong,Jean-Leon; Chen,Wen-Yi; Dureska,Geoffrey; Sites,Emily; Pan,Tony; Sharma,Ashish; Huang,Kun; Ridgway,Randall; Mosaliganti,Kishore; Sharp,Richard; Machiraju,Raghu; Saltz,Joel; Yamamoto,Hideyuki; Cross,James,C; Robinson,Michael,L; Leone,Gustavo, 2007, "Rb is critical in a mammalian tissue stem cell population." GENES & DEVELOPMENT 21, no. 1, 85-97 - 85-97.

2003

  • Kurc, T.; Hastings, S.; Catalyurek, U.V.; Saltz, J. et al., 2003, "A distributed execution environment for analysis of DCE-MR image datasets." Journal of Digital Imaging 16, no. SUPPL., 4-8 - 4-8.

Papers in Proceedings

2018

  • Agarwal, M.; Narcisse, D.; Khouzam, N.; Khouzam, R. "Foreword." (2 2018).
  • Agarwal, M.; Narcisse, D.; Khouzam, N.; Khouzam, R. "Foreword." (2 2018).

2016

  • Meng, N.; Machiraju, R.; Huang, K. "Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.." (12 2016).
  • Meng, N.; Machiraju, R.; Huang, K. "Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types." in 27th International Conference on Genome Informatics - Bioinformatics. (12 2016).
  • Meng, N.; Machiraju, R.; Huang, K. "Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.." (12 2016).
  • Meng, N.; Machiraju, R.; Huang, K. "Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types." (12 2016).
  • Meng, N.; Machiraju, R.; Huang, K. "Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types." (12 2016).

2015

  • Ayan Biswas, David Thompson, Wenbin He, Qi Deng, Chun-Ming Chen, Han-Wei Shen, Raghu Machiraju, and Anand Rangarajan "An Uncertainty-Driven Approach to Vortex Analysis Using Oracle Consensus and Spatial Proximity." in Pacific Visualization 2015. (4 2015).
  • *Ji, X.; Machiraju, R.; Ritter, A.; Yen, P-Y. "Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews." in AMIA. (1 2015).
  • Biswas, A.; Thompson, D.; He, W.; Deng, Q. et al. "An Uncertainty-Driven Approach to Vortex Analysis Using Oracle Consensus and Spatial Proximity." (1 2015).
  • Biswas, A.; Thompson, D.; He, W.; Deng, Q. et al. "An uncertainty-driven approach to vortex analysis using oracle consensus and spatial proximity." (1 2015).
  • Ji, X.; Machiraju, R.; Ritter, A.; Yen, P.Y. "Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews." (1 2015).
  • Ji, X.; Machiraju, R.; Ritter, A.; Yen, P-Y. "Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews.." (1 2015).
  • Ji, X.; Machiraju, R.; Ritter, A.; Yen, P-Y. "Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews.." (1 2015).
  • Ji, X.; Machiraju, R.; Ritter, A.; Yen, P-Y. "Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews.." (1 2015).
  • Biswas, A.; Thompson, D.; He, W.; Deng, Q. et al. "An Uncertainty-Driven Approach to Vortex Analysis Using Oracle Consensus and Spatial Proximity." in IEEE Pacific Visualization Symposium (PacificVis). (1 2015).

2014

  • Zhang, L.; Machiraju, R.; Thompson, D.; Rangarajan, A. et al. "Adaptive boosting for enhanced vortex visualization." (1 2014).
  • Wang C, Machiraju R, Huang K "Cancer Patient Integrative Stratification via a Two-step Consensus Clustering of Molecular Expression and Clinical Attributes.." in 2014 AMIA (American Medical Informatics Association) Summit on Translational Bioinformatics,. (4 2014).

2013

  • Zhang, L.; Machiraju, R.; Thompson, D. "CAVIAR-based vortex core region detection." (1 2013).
  • Park, D.Y.; Jones, D.; Moldovan, N.I.; Machiraju, R. et al. "Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image." (1 2013).
  • Park D-Y, Jones D, Moldovan N, Machiraju R, Pécot T "Robust Detection and Visualization of 
Cytoskeletal Structures in Fibrillar Scaffolds from 3-Dimensional Confocal Images." in IEEE Symposium 
on Biological Data Visualization (BioVis) 2013,. (10 2013).
  • Park, D.Y.; Jones, D.; Moldovan, N.I.; Machiraju, R. et al. "Robust Detection and Visualization of Cytoskeletal Structures in Fibrillar Scaffolds from 3-Dimensional Confocal Image." in IEEE Symposium on Biological Data Visualization. (1 2013).
  • Zhang, L.; Machiraju, R.; Thompson, D. "CAVIAR-Based Vortex Core Region Detection." in 13th International Conference on Computer-Aided Design and Computer Graphics (CAD/Graphics). (1 2013).
  • Zhang, L.; Machiraju, R.; Thompson, D.; IEEE, "CAVIAR-Based Vortex Core Region Detection." (1 2013).
  • Park, D.Y.; Jones, D.; Moldovan, N.I.; Machiraju, R. et al. "Robust Detection and Visualization of Cytoskeletal Structures in Fibrillar Scaffolds from 3-Dimensional Confocal Image." (1 2013).

2012

  • Machiraju, R.; Singh, S.; Pecot, T.; Huang, K. et al. "Quantitative Cellular Phenotyping in Tissue Microenvironments." in Experimental Biology Meeting. (4 2012).
  • Pecot,Thierry; Singh,Shantanu; Caserta,Enrico; Huang,Kun; Machiraju,Raghu; Leone,Gustavo "NON PARAMETRIC CELL NUCLEI SEGMENTATION BASED ON A TRACKING OVER DEPTH FROM 3D FLUORESCENCE CONFOCAL IMAGES." in 9th IEEE International Symposium on Biomedical Imaging (ISBI) - From Nano to Macro. (1 2012).
  • Han,Zhi; Tian,Lu; Pecot,Thierry; Huang,Tim; Machiraju,Raghu; Huang,Kun "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data." in 1st Annual Meeting of the Great Lakes Bioinformatics (GLBIO). (3 2012).
  • Han, Z.; Tian, L.; Pécot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.." (3 2012).
  • Pecot, T.; Singh, S.; Caserta, E.; Huang, K. et al. "Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images." (8 2012).
  • Zhang, L.; Meng, X.; Machiraju, R.; Thompson, D. "Distance measure in vortex visualization." (10 2012).
  • Han, Z.; Tian, L.; Pécot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.." (12 2012).
  • Han, Z.; Tian, L.; Pecot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data." in 1st Annual Meeting of the Great Lakes Bioinformatics (GLBIO). (3 2012).
  • Han, Z.; Tian, L.; Pécot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data." (1 2012).
  • Pecot, T.; Singh, S.; Caserta, E.; Huang, K. et al. "NON PARAMETRIC CELL NUCLEI SEGMENTATION BASED ON A TRACKING OVER DEPTH FROM 3D FLUORESCENCE CONFOCAL IMAGES." in 9th IEEE International Symposium on Biomedical Imaging (ISBI) - From Nano to Macro. (1 2012).
  • Han, Z.; Tian, L.; Pécot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.." (3 2012).
  • Machiraju, R.; Singh, S.; Pecot, T.; Huang, K. et al. "Quantitative Cellular Phenotyping in Tissue Microenvironments." (4 2012).
  • Han, Z.; Tian, L.; Pecot, T.; Huang, T. et al. "A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data." (3 2012).
  • Pecot, T.; Singh, S.; Caserta, E.; Huang, K. et al. "NON PARAMETRIC CELL NUCLEI SEGMENTATION BASED ON A TRACKING OVER DEPTH FROM 3D FLUORESCENCE CONFOCAL IMAGES." (1 2012).

2011

  • Janoos,Firdaus; Singh,Shantanu; Machiraju,Raghu; Wells,William,M; Morocz,Istvan,A "State-Space Models of Mental Processes from fMRI." in 22nd International Conference on Information Processing in Medical Imaging (IPMI). (7 2011).
  • Irfanoglu,M,O; Walker,L; Sammet,S; Pierpaoli,C; Machiraju,R "Susceptibility Distortion Correction for Echo Planar Images with Non-uniform B-Spline Grid Sampling: A Diffusion Tensor Image Study." in 14th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011). (9 2011).
  • Irfanoglu, M.O.; Walker, L.; Sammet, S.; Pierpaoli, C. et al. "Susceptibility distortion correction for echo planar images with non-uniform B-spline grid sampling: A diffusion tensor image study." (10 2011).
  • Singh, S.; Janoos, F.; Pécot, T.; Caserta, E. et al. "Non-parametric population analysis of cellular phenotypes." (10 2011).
  • Singh,Shantanu; Janoos,Firdaus; Pecot,Thierry; Caserta,Enrico; Huang,Kun; Rittscher,Jens; Leone,Gustavo; Machiraju,Raghu "Non-parametric Population Analysis of Cellular Phenotypes." in 14th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011). (9 2011).
  • Singh,Shantanu; Janoos,Firdaus; Pecot,Thierry; Caserta,Enrico; Leone,Gustavo; Rittscher,Jens; Machiraju,Raghu "Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning." in 22nd International Conference on Information Processing in Medical Imaging (IPMI). (1 2011).

2010

  • Singh, S.; Raman, S.; Caserta, E.; Leone, G. et al. "ANALYSIS OF SPATIAL VARIATION OF NUCLEAR MORPHOLOGY IN TISSUE MICROENVIRONMENTS." (1 2010).
  • Irfanoglu M, Koay G, Basser P, Machiraju R "Diffusion Tensor Field Registration in the Presence of Uncertainty." in Medical Image Computing and Computer Assisted Intervention Conference (MICCAI) 2009. (1 2010).
  • Janoos F, Irfanoglu O, Afacan O, Machiraju R, Warfield S, Wald L, Morocz I "Brain State Identification from fMRI Using Unsupervised Learning." in Proceedings of Human Brain Mapping. (1 2010).
  • Mosaliganti K, Janoos F, Gelas A, Noche R, Obholzer N, Machiraju R, Megason S "Anisotropic Plate Diffusion Filtering for Detection of Cell Membranes in 3D Microscopy Images." in The IEEE International Symposium on Biomedical Imaging (ISBI) 2010. (4 2010).
  • Singh, S.; Raman, S.; Caserta, E.; Leone, G. et al. "ANALYSIS OF SPATIAL VARIATION OF NUCLEAR MORPHOLOGY IN TISSUE MICROENVIRONMENTS." in 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (1 2010).
  • Botha, C.; Hornegger, J.; Machiraju, R.; Wiebel, A. et al. "Foreword." (12 2010).
  • Sammet, S.; Irfanoglu, O.; Koch, R.; Schmalbrock, P. et al. "Diffusion Tensor Imaging and Fibertracking at 7T." in 110th Annual Meeting of the American-Roentgen-Ray-Society. (5 2010).
  • Mosaliganti, K.; Janoos, F.; Gelas, A.; Noche, R. et al. "ANISOTROPIC PLATE DIFFUSION FILTERING FOR DETECTION OF CELL MEMBRANES IN 3D MICROSCOPY IMAGES." (1 2010).
  • Janoos, F.; Machiraju, R.; Sammet, S.; Knopp, M.V. et al. "MEASURING EFFECTS OF LATENCY IN BRAIN ACTIVITY WITH FMRI." in 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (1 2010).
  • Janoos, F.; Machiraju, R.; Morocz, I.A. "Decoding brain states from fMRI data." in 15th World Congress of Psychophysiology. (9 2010).
  • Mosaliganti, K.; Janoos, F.; Gelas, A.; Noche, R. et al. "ANISOTROPIC PLATE DIFFUSION FILTERING FOR DETECTION OF CELL MEMBRANES IN 3D MICROSCOPY IMAGES." in 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (1 2010).
  • Sammet, S.; Irfanoglu, O.; Koch, R.; Schmalbrock, P. et al. "Diffusion Tensor Imaging and Fibertracking at 7T." (5 2010).
  • Janoos, F.; Machiraju, R.; Sammet, S.; Knopp, M.V. et al. "Measuring effects of latency in brain activity with fMRI." (8 2010).
  • Singh,S; Raman,S; Caserta,E; Leone,G; Ostrowski,M; Rittscher,J; Machiraju,R "ANALYSIS OF SPATIAL VARIATION OF NUCLEAR MORPHOLOGY IN TISSUE MICROENVIRONMENTS." in 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (1 2010).
  • F.Janoos, R. Machiraju, S. Sammet, M.V. Knopp and I.A. Morocz "Unsupervised Learning of Brain States from fMRI Data." in 3th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) Conference, 2010. (1 2010).
  • Singh S, Raman S, Caserta E, Leone G, Ostrowski M, Rittscher J, Machiraju R "Analysis of Spatial Variation of Nuclear Morphology in Tissue Microenviroments." in International Symposium on Biological Imaging, Rotterdam, The Netherlands, April 2010 (to appear).. (1 2010).
  • Singh, S.; Raman, S.; Caserta, E.; Leone, G. et al. "Analysis of spatial variation of nuclear morphology in tissue microenvironments." (8 2010).
  • Mosaliganti, K.; Janoos, F.; Gelas, A.; Noche, R. et al. "ANISOTROPIC PLATE DIFFUSION FILTERING FOR DETECTION OF CELL MEMBRANES IN 3D MICROSCOPY IMAGES.." (1 2010).
  • Janoos,Firdaus; Machiraju,Raghu; Morocz,Istvan,A "Decoding brain states from fMRI data." in 15th World Congress of Psychophysiology. (9 2010).
  • Janoos, F.; Machiraju, R.; Morocz, I.A. "Decoding brain states from fMRI data." (9 2010).
  • Sammet,S; Irfanoglu,O; Koch,R; Schmalbrock,P; Choi,S; Machiraju,R; Yuh,W; Knopp,M "Diffusion Tensor Imaging and Fibertracking at 7T." in 110th Annual Meeting of the American-Roentgen-Ray-Society. (5 2010).
  • Janoos,Firdaus; Machiraju,Raghu; Sammet,Steffen; Knopp,Michael,V; Warfield,Simon,K; Morocz,Istvan,Akos "Measuring Effects of Latency in Brain Activity with FMRI." in 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro. (1 2010).
  • Janoos, F.; Machiraju, R.; Sammet, S.; Knopp, M.V. et al. "MEASURING EFFECTS OF LATENCY IN BRAIN ACTIVITY WITH FMRI." (1 2010).
  • Mosaliganti, K.; Janoos, F.; Gelas, A.; Noche, R. et al. "Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images." (8 2010).
  • Mosaliganti, K.; Janoos, F.; Gelas, A.; Noche, R. et al. "ANISOTROPIC PLATE DIFFUSION FILTERING FOR DETECTION OF CELL MEMBRANES IN 3D MICROSCOPY IMAGES.." (1 2010).

2009

  • Irfanoglu, M.O.; Koay, C.G.; Pajevic, S.; Machiraju, R. et al. "Diffusion tensor field registration in the presence of uncertainty." (12 2009).
  • Janoos, F.; Mosaliganti, K.; Xu, X.; Machiraju, R. et al. "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging.." (2 2009).
  • Janoos, F.; Mosaliganti, K.; Xu, X.; Machiraju, R. et al. "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging." (2 2009).
  • Janoos, F.; Mosaliganti, K.; Xu, X.; Machiraju, R. et al. "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging.." (2 2009).
  • Janoos,Firdaus; Mosaliganti,Kishore; Xu,Xiaoyin; Machiraju,Raghu; Huang,Kun; Wong,Stephen,TC "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging." in 1st International Workshop on Microscopy Image Analysis with Applications to Biology. (2 2009).
  • Janoos,Firdaus; Nouanesengsy,Boonthanome; Machiraju,Raghu; Shen,Han,Wei; Sammet,Steffen; Knopp,Michael; Morocz,Istvan,A "Visual Analysis of Brain Activity from fMRI Data." in 11th Eurographics/IEEE VGTC Symposium on Visualization (EuroVis 09). (6 2009).
  • Janoos, F.; Mosaliganti, K.; Xu, X.; Machiraju, R. et al. "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging." (2 2009).
  • Janoos, F.; Mosaliganti, K.; Xu, X.; Machiraju, R. et al. "Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging." in 1st International Workshop on Microscopy Image Analysis with Applications to Biology. (2 2009).

2008

  • Janoos, F.; Nouansengsy, B.; Xu, X.; Machiraju, R. et al. "Classification and uncertainty visualization of dendritic spines from optical microscopy imaging." in 10th Eurographics/IEEE VGTC Symposium on Visualization (EuroVis 08). (5 2008).
  • Mosaliganti, K.; Machiraju, R.; Huang, K. "Geometry-driven visualization of microscopic structures in biology." (9 2008).
  • Janoos, F.; Nouansengsy, B.; Xu, X.; Machiraju, R. et al. "Classification and uncertainty visualization of dendritic spines from optical microscopy imaging." (5 2008).
  • Singh, S.; Mosaliganti, K.; Machiraju, R. "Microstructure preserving synthesis of biomedical images." in 5th IEEE International Symposium on Biomedical Imaging. (1 2008).
  • Singh, S.; Mosaliganti, K.; Machiraju, R.; IEEE, "Microstructure preserving synthesis of biomedical images." (1 2008).
  • Mosaliganti, K.; Machiraju, R.; Huang, K.; IEEE, "Geometry-driven visualization of microscopic structures in biology." (1 2008).
  • Mosaliganti, K.; Machiraju, R.; Huang, K. "Geometry-driven visualization of microscopic structures in biology." in 5th IEEE International Symposium on Biomedical Imaging. (1 2008).
  • Mosaliganti,K; Machiraju,R; Huang,K "Geometry-driven visualization of microscopic structures in biology." in 5th IEEE International Symposium on Biomedical Imaging. (4 2008).
  • Janoos, F.; Nouansengsy, B.; Xu, X.; MacHiraju, R. et al. "Classification and uncertainty visualization of dendritic spines from optical microscopy imaging." (5 2008).
  • Jankun-Kelly, M.; Thompson, D.; Jiang, M.; Shannahan, B. et al. "Vortex characterization for engineering applications." (12 2008).
  • Singh, S.; Mosaliganti, K.; Machiraju, R. "Microstructure preserving synthesis of biomedical images." (9 2008).

2007

  • Janoos, F.; Singh, S.; Irfanoglu, O.; Machiraju, R. et al. "Activity analysis using spatio-temporal trajectory volumes in surveillance applications." (12 2007).
  • Janoos, F.; Machiraju, R.; Parent, R.; Davis, J.W. et al. "Sensor configuration for coverage optimization for surveillance applications." (5 2007).
  • Janoos, F.; Singh, S.; Irfanoglu, O.; Machiraju, R. et al. "Activity analysis using spatio-temporal trajectory volumes in surveillance applications." in IEEE Symposium on Visual Analytics Science and Technology. (1 2007).
  • Janoos, F.; Singh, S.; Irfanoglu, O.; Machiraju, R. et al. "Activity analysis using spatio-temporal trajectory volumes in surveillance applications." (1 2007).
  • Janoos, F.; Machiraju, R.; Parent, R.; Davis, J.W. et al. "Sensor configuration for coverage optimization for surveillance applications." (1 2007).
  • Janoos, F.; Machiraju, R.; Parent, R.; Davis, J.W. et al. "Sensor configuration for coverage optimization for surveillance applications." in 9th Videometrics Conference. (1 2007).

2006

  • Sharp, R.; Adams, J.; Machiraju, R.; Lee, R. et al. "Simulating transillumination in organic material with near infrared light." (12 2006).
  • Mosaliganti,Kishore; Pan,Tony; Sharp,Richard; Ridgway,Randall; Iyengar,Srivathsan; Gulacy,Alexandra; Wenzel,Pamela; de Bruin,Alain; Machiraju,Raghu; Huang,Kun; Leone,Gustavo; Saltz,Joel "Registration and 3D visualization of large microscopy images." in Medical Imaging 2006 Conference. (1 2006).
  • Mehta, S.; Parthasarathy, S.; Machiraju, R. "Visual exploration of spatio-temporal relationships for scientific data." in IEEE Symposium on Visual Analytics Science and Technology. (1 2006).
  • Mosaliganti, K.; Pan, T.; Sharp, R.; Ridgway, R. et al. "Registration and 3D visualization of large microscopy images." (6 2006).
  • Mehta, S.; Parthasarathy, S.; Machiraju, R. "On trajectory representation for scientific features." in 6th IEEE International Conference on Data Mining. (1 2006).
  • Mehta, S.; Parthasarathy, S.; Machlraju, R. "Visual exploration of spatio-temporal relationships for scientific data." (12 2006).
  • Kim, Y.; MacHiraju, R.; Thompson, D. "Path-based control of smoke simulations." (9 2006).
  • Mehta, S.; Parthasarathy, S.; Machiraju, R. "On trajectory representation for scientific features." (1 2006).
  • Mehta, S.; Parthasarathy, S.; Machiraju, R.; Keim, D. "Visual exploration of spatio-temporal relationships for scientific data." (1 2006).
  • Mosaliganti, K.; Pan, T.; Sharp, R.; Ridgway, R. et al. "Registration and 3D visualization of large microscopy images." (1 2006).
  • Mosaliganti, K.; Pan, T.; Sharp, R.; Ridgway, R. et al. "Registration and 3D visualization of large microscopy images." in Medical Imaging 2006 Conference. (1 2006).
  • Mehta, S.; Parthasarathy, S.; Machiraju, R. "On trajectory representation for scientific features." (12 2006).
  • Jankun-Kelly, M.; Thompson, D.S.; Brewer, W.; Jiang, M. et al. "A multistage vortex visualization method." (12 2006).

2005

  • Sharp, R.; Machiraju, R. "A simplified model for inhomogeneous subsurface scattering." in 4th International Workshop on Volume Graphics. (1 2005).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "A bilinear illumination model for robust face recognition." in 10th IEEE International Conference on Computer Vision (ICCV 2005). (1 2005).
  • Chen, Y.; Lee, J.; Parent, R.; Machiraju, R. "Markerless monocular motion capture using image features and physical constraints." in Computer Graphics International Conference (CGI 2005). (1 2005).
  • Mehta, S.; Barr, S.; Choy, T-S.; Yang, H. et al. "Dynamic Classification of Defect Structures in Molecular Dynamics Simulation Data." (1 2005).
  • Sharp,R; Machiraju,R "A simplified model for inhomogeneous subsurface scattering." in 4th International Workshop on Volume Graphics. (1 2005).
  • Mehta, S.; Barr, S.; Choy, T-S.; Yang, H. et al. "Dynamic Classification of Defect Structures in Molecular Dynamics Simulation Data." in 5th SIAM International Conference on Data Mining. (1 2005).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. et al. "A bilinear illumination model for robust face recognition." (1 2005).
  • Mehta, S.; Barr, S.; Choy, T.S.; Yang, H. et al. "Dynamic classification of defect structures in molecular dynamics simulation data." (12 2005).
  • Sharp, R.; Machiraju, R. "A simplified model for inhomogeneous subsurface scattering." (1 2005).
  • Glimcher, L.; Agrawal, G.; Mehta, S.; Jin, R. et al. "Parallelizing a defect detection and categorization application." (12 2005).
  • Sharp, R.; Machiraju, R. "A simplified model for inhomogeneous subsurface scattering." (12 2005).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "A bilinear illumination model for robust face recognition." (12 2005).
  • Chen, Y.; Lee, J.; Parent, R.; Machiraju, R. "Markerless monocular motion capture using image features and physical constraints." (10 2005).
  • Chen, Y.; Lee, J.; Parent, R.; Machiraju, R. "Markerless monocular motion capture using image features and physical constraints." (1 2005).

2004

  • Lee, J.H.; Moghaddam, B.; Pfister, H.; Machiraju, R. "Finding optimal views for 3D face shape modeling." in 6th IEEE International Conference on Automatic Face and Gesture Recognition. (1 2004).
  • Scoggins, R.K.; Machiraju, R. "Frequency space techniques for BRDF shading." (1 2004).
  • Mehta, S.; Hazzard, K.; Machiraju, R.; Parthasarathy, S. et al. "Detection and visualization of anomalous structures in molecular dynamics simulation data." in IEEE Visualization 2004 Conference. (1 2004).
  • Scoggins, R.K.; Machiraju, R. "Frequency space techniques for BRDF shading." (12 2004).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "Finding optimal views for 3D face shape modeling." (9 2004).
  • Kim, Y.; Machiraju, R.; Thompson, D. "Rough interface reconstruction using the level set method." in IEEE Visualization 2004 Conference. (1 2004).
  • Scoggins, R.K.; Machiraju, R. "Frequency space techniques for BRDF shading." in Conference on Targets and Backgrounds X. (1 2004).
  • Kim, Y.; Machiraju, R.; Thompson, D. "Rough interface reconstruction using the level set method." (12 2004).
  • S. Mehta, A. Choy, S. Barr, K. Hazzard, R. Machiraju, S. Parthasarathy, J. Wilkins Detection and Visualization of Anomalous Structures in Molecular Dynamics Simulation Data. in IEEE Visualization Conference (Vis). http://www.informatik.uni-trier.de/~ley/db/conf/visualization/visualization2004.html#MehtaHMPW04, (1 2004).
  • Lee,J,H; Moghaddam,B; Pfister,H; Machiraju,R "Finding optimal views for 3D face shape modeling." in 6th IEEE International Conference on Automatic Face and Gesture Recognition. (1 2004).
  • Kim, Y.; Machiraju, R.; Thompson, D. "Rough interface reconstruction using the level set method." (1 2004).
  • Mehta, S.; Hazzard, K.; Machiraju, R.; Parthasarathy, S. et al. "Detection and visualization of anomalous structures in molecular dynamics simulation data." (1 2004).
  • Mehta, S.; Hazzard, K.; Machiraju, R.; Parthasarathy, S. et al. "Detection and visualization of anomalous structures in molecular dynamics simulation data." (12 2004).
  • Lee, J.H.; Moghaddam, B.; Pfister, H.; Machiraju, R. et al. "Finding optimal views for 3D face shape modeling." (1 2004).

2003

  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "Silhouette-based 3D face shape recovery." (1 2003).
  • Machiraju, R.; Johnson, C.; Yoo, T.; Crawfis, R. et al. "Do I really see a bone?." (1 2003).
  • Kim, Y.; Machiraju, R.; Thompson, D.; SOCIETY, I.C. et al. "Rough surface modeling using surface growth." (1 2003).
  • Machiraju, R.; Johnson, C.; Yoo, T.; Crawfis, R. et al. "Do I really see a bone?." in IEEE Visualization 2003 Conference. (1 2003).
  • Kim, Y.; Machiraju, R.; Thompson, D. "Rough surface modeling using surface growth." (12 2003).
  • Moghaddam, B.; Lee, J.; Pfister, H.; Machiraju, R. "Model-based 3D face capture with shape-from-silhouettes." in IEEE International Workshop on Analysis and Modeling of Faces and Gestures (AMFG 2003). (1 2003).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "Silhouette-based 3D face shape recovery." in 29th Graphics Interface Conference. (1 2003).
  • Moghaddam, B.; Lee, J.; Pfister, H.; Machiraju, R. "Model-based 3D face capture with shape-from-silhouettes." (1 2003).
  • Jiang, M.; Choy, T.S.; Mehta, S.; Coatney, M. et al. "Feature mining paradigms for scientific data." (1 2003).
  • Kim, Y.; Machiraju, R.; Thompson, D. "Rough surface modeling using surface growth." in International Conference on Shape Modeling International (SMI 2003). (1 2003).
  • Lee, J.; Moghaddam, B.; Pfister, H.; Machiraju, R. "Silhouette-Based 3D Face Shape Recovery." (12 2003).
  • Moghaddam,B; Lee,J; Pfister,H; Machiraju,R "Model-based 3D face capture with shape-from-silhouettes." in IEEE International Workshop on Analysis and Modeling of Faces and Gestures (AMFG 2003). (1 2003).
  • Jiang, M.; Choy, T.S.; Mehta, S.; Coatney, M. et al. "Feature mining paradigms for scientific data." in 3rd SIAM International Conference on Data Mining. (1 2003).
  • M. Jiang, T.-S. Choy, S. Mehta, M. Coatney, S. Barr, K. Hazzard, D. Richie, S. Parthasarathy, R. Machiraju, D. Thompson, J. Wilkins, and B. Gatlin Feature Mining Paradigms for Scientific Data. in SIAM International Conference on Data Mining (SDM'03). http://www.informatik.uni-trier.de/~ley/db/conf/sdm/sdm2003.html#JiangCMCBHRPMTWG03, (1 2003).
  • Kim,Y; Machiraju,R; Thompson,D "Rough surface modeling using surface growth." in International Conference on Shape Modeling International (SMI 2003). (1 2003).

2002

  • Polapally, N.K.; Machiraju, R.; Panda, D. "Feature estimation for efficient streaming." in 7th Symposium on Volume Visualization and Graphics. (1 2002).
  • Entezari, A.; Scoggins, R.; Moller, T.; Machiraju, R. "Shading for Fourier Volume Rendering." in 7th Symposium on Volume Visualization and Graphics. (1 2002).
  • Polapally,N,K; Machiraju,R; Panda,D "Feature estimation for efficient streaming." in 7th Symposium on Volume Visualization and Graphics. (1 2002).
  • Polapally, N.K.; Machiraju, R.; Panda, D. "Feature estimation for efficient streaming." (1 2002).
  • Kumar Polapally, N.; Machiraju, R.; Panda, D. "Feature estimation for efficient streaming." (1 2002).
  • Jiang, M.; Machiraju, R.; Thompson, D. "Geometric verification of swirling features in flow fields." (1 2002).
  • Jiang, M.; Machiraju, R.; Thompson, D. "Geometric verification of swirling features in flow fields." in IEEE Visualization 2002 Conference. (1 2002).
  • Jiang, M.; Machiraju, R.; Thompson, D. "Geometric verification of swirling features in flow fields." (1 2002).
  • Entezari, A.; Scoggins, R.; Möller, T.; Machiraju, R. "Shading for Fourier volume rendering." (1 2002).
  • Entezari, A.; Scoggins, R.; Moller, T.; Machiraju, R. "Shading for Fourier Volume Rendering." (1 2002).
  • Jiang,M; Machiraju,R; Thompson,D "Geometric verification of swirling features in flow fields." in IEEE Visualization 2002 Eurovis Conference. (1 2002).

2001

  • Scoggins,R; Machiraju,R; Moorhead,R,J "Approximate shading for the re-illumination of synthetic images." in IEEE Visualization Conference. (1 2001).
  • Machiraju,R; Fowler,J,E; Thompson,D; Soni,B; Schroeder,W "EVITA - Efficient visualization and interrogation of tera-scale data." in Workshop on Mining Scientific Datasets. (1 2001).
  • Tenginakai, S.; Lee, J.; Machiraju, R. "Salient iso-surface detection with model-independent statistical signatures." in IEEE Visualization Conference. (1 2001).
  • Machiraju, R.; Fowler, J.E.; Thompson, D.; Soni, B. et al. "EVITA - Efficient visualization and interrogation of tera-scale data." (1 2001).
  • Scoggins, R.; Machiraju, R.; Moorhead, R.J. "Approximate shading for the re-illumination of synthetic images." in IEEE Visualization Conference. (1 2001).
  • Scoggins, R.; Machiraju, R.; Moorhead, R.J. "Approximate shading for the re-illumination of synthetic images." (1 2001).
  • Tenginakai,S; Lee,J; Machiraju,R "Salient iso-surface detection with model-independent statistical signatures." in IEEE Visualization Conference. (1 2001).
  • Machiraju, R.; Fowler, J.E.; Thompson, D.; Soni, B. et al. "EVITA - Efficient visualization and interrogation of tera-scale data." in Workshop on Mining Scientific Datasets. (1 2001).
  • Scoggins, R.; Machiraju, R.; Moorhead, R.J. "Approximate shading for the re-illumination of synthetic images." (1 2001).
  • Tenginakai, S.; Lee, J.; Machiraju, R. "Salient iso-surface detection with model-independent statistical signatures." (1 2001).
  • Tenginakai, S.; Lee, J.; Machiraju, R. "Salient iso-surface detection with model-independent statistical signatures." (1 2001).

2000

  • Scoggins, R.K.; Machiraju, R.; Moorhead, R.J.; SOCIETY, I.C. et al. "Enabling level-of-detail matching for exterior scene synthesis." (1 2000).
  • Scoggins, R.K.; Machiraju, R.; Moorhead, R.J. "Enabling level-of-detail matching for exterior scene synthesis." in IEEE Visualization Conference. (1 2000).
  • Scoggins, R.K.; Machiraju, R.; Moorhead, R.J. "Enabling level-of-detail matching for exterior scene synthesis." (12 2000).

1999

  • Burton, L.C.; Machiraju, R.; Reese, D.S. "Dynamic view-dependent partitioning of structured grids with complex boundaries for object-order rendering techniques." (10 1999).

1998

  • Moller, T.; Mueller, K.; Kurzion, Y.; Machiraju, R. et al. "Design of accurate and smooth filters for function and derivative reconstruction." (1 1998).
  • Machiraju, R.; Zhu, Z.; Fry, B.; Moorhead, R. "Structure-significant representation of structured datasets." (12 1998).
  • Machiraju,R; Zhu,Z,F; Fry,B; Moorhead,R "Structure-significant representation of structured datasets." in 8th Annual IEEE Conference on Visualization. (4 1998).
  • Möller, T.; Mueller, K.; Kurzion, Y.; Machiraju, R. et al. "Design of accurate and smooth filters for function and derivative reconstruction." (10 1998).
  • Machiraju, R.; Zhu, Z.F.; Fry, B.; Moorhead, R. "Structure-significant representation of structured datasets." (1 1998).
  • Kiu, M.H.; Du, X.S.; Moorhead, R.J.; Banks, D.C. et al. "Two dimensional sequence compression using MPEG." (12 1998).
  • Moller, T.; Mueller, K.; Kurzion, Y.; Machiraju, R. et al. "Design of accurate and smooth filters for function and derivative reconstruction." in IEEE Symposium on Volume Visualization. (1 1998).
  • Kompella, N.; Machiraju, R.; Choudhary, A.; Skjellum, A. "Wavelet based compression and denoising of convolution operators." (12 1998).
  • Machiraju, R.; Zhu, Z.F.; Fry, B.; Moorhead, R. "Structure-significant representation of structured datasets." in 8th Annual IEEE Conference on Visualization. (4 1998).
  • Kompella, N.; Machiraju, R.; Choudhary, A.; Skjellum, A. "Wavelet based compression and denoising of convolution operators." in Conference on Wavelet Applications in Signal and Image Processing VI. (1 1998).
  • Kompella, N.; Machiraju, R.; Choudhary, A.; Skjellum, A. "Wavelet based compression and denoising of convolution operators." (1 1998).

1997

  • Machiraju, R.; Vickery, R. "Detection and controlled manipulation of coherent structures in medical images." (1 1997).
  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. "A comparison of normal estimation schemes." (1 1997).
  • Machiraju, R.; Gaddipatti, A.; Yager, R. "Detection and enhancement of scale-coherent structures using wavelet transform products." (12 1997).
  • Gaddipatti, A.; Machiraju, R.; Yagel, R. "Steering image generation with wavelet based perceptual metric." in 18th Annual Conference of the European-Association-for-Computer-Graphics (Eurographics 97). (1 1997).
  • Machiraju, R.; Vickery, R. "Detection and controlled manipulation of coherent structures in medical images." in 16th Southern Biomedical Engineering Conference. (1 1997).
  • Kiu, M.H.; Du, X.S.; Moorhead, R.J.; Banks, D.C. et al. "Two dimensional sequence compression using MPEG." (1 1997).
  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. "A comparison of normal estimation schemes." in 8th Annual IEEE Conference on Visualization. (1 1997).
  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. "Evaluation and design of filters using a Taylor series expansion." in Meeting of Visualization 96 / Volume Visualization Symposium 96. (4 1997).
  • Kiu, M.H.; Du, X.S.; Moorhead, R.J.; Banks, D.C. et al. "Two dimensional sequence compression using MPEG." in Visual Communications and Image Processing 1998 Conference. (1 1997).
  • Gaddipatti, A.; Machiraju, R.; Yagel, R. "Steering image generation with wavelet based perceptual metric." (12 1997).
  • Machiraju, R.; Gaddipatti, A.; Yagel, R. "Detection and enhancement of scale-coherent structures using wavelet transform products." (1 1997).
  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. "Evaluation and design of filters using a Taylor series expansion." (1 1997).
  • Machiraju, R.; Gaddipatti, A.; Yagel, R. "Detection and enhancement of scale-coherent structures using wavelet transform products." in Conference on Wavelet Applications in Signal and Image Processing V. (1 1997).
  • Zhu, Z.F.; Machiraju, R.; Fry, B.; Moorhead, R. "Wavelet-based multiresolutional representation of computational field simulation datasets." (1 1997).
  • Gaddipatti, A.; Machiraju, R.; Yagel, R. "Steering image generation with wavelet based perceptual metric." (1 1997).
  • Zhu, Z.F.; Machiraju, R.; Fry, B.; Moorhead, R. "Wavelet-based multiresolutional representation of computational field simulation datasets." in 8th Annual IEEE Conference on Visualization. (1 1997).

1996

  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. "Classification and local error estimation of interpolation and derivative filters for volume rendering." in 1996 Symposium on Volume Visualization. (1 1996).
  • Moller, T.; Machiraju, R.; Mueller, K.; Yagel, R. et al. "Classification and local error estimation of interpolation and derivative filters for volume rendering." (1 1996).

1995

  • Machiraju, R.; Swan, E.; Yagel, R. "Spatial domain characterization and control of reconstruction errors." (1 1995).
  • Machiraju, R.; Swan, E.; Yagel, R. "Spatial domain characterization and control of reconstruction errors." in Eurographics Workshop - Rendering Techniques 95. (1 1995).